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Products of research
Selected publications | Selected publications |
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Bishop, R., Geysen, D., Skilton, R., Odongo, D., Nene, V., Allsopp, B., Mbogo, S., Spooner, P. and Morzaria, S. 2002. Genomic polymorphism, sexual recombination and molecular epidemiology of Theileria parva. pp 23–40. In: Theileria, eds. D. McKeever, D. and Dobbelaere, D. Kluwer Academic Press, The Netherlands. (Review) Bishop, R., Shah, T., Pellé, R., Hoyle, D., Pearson, T., Haines, L., Brass, A., Hulme, H., Graham, S. P., Taracha, E. L. N., Lu, C., Hass, B., Wortman, J., White, O., Gardner, M. J., Nene, V. and de Villiers, E. P. 2005. Analysis of the transcriptome of the protozoan Theileria parva using MPSS reveals that the majority of genes are transcriptionally active in the schizont stage. Nucleic Acids Research 25:5503–5511. Chakraborty, S., Ghosh, R., Ghosh, M., Fernandes, C. D., Charchar, M. J. and Kelemu, S. 2004. Weather-based prediction of anthracnose severity using artificial neural network models. Plant Pathology 53:375–386. Collins, N. E., Liebenberg, J., de Villiers, E. P., Brayton, K. A., Louw, E., Pretorius, E., Faber, F. E., van Heerden, H., Josemans, A., van Kleef, M., Steyn, H. C., van Strijp, M. F., Zweygarth, E., Jongejan, F., Maillard, J. C., Berthier, D., Botha, M., Joubert, F., Corton, C. H., Thomson, N. R., Allsopp, M. T. and Allsopp, B. A. 2005. The genome of the heartwater agent Ehrlichia ruminantium contains multiple tandem repeats of actively variable copy number. Proceedings of the National Academy of Sciences 102:838–843. Cox, A., Tilley, A., McOdimba, F., Fyfe, J., Eisler, M., Hide, G. and Welburn, S. 2005. A PCR based assay for detection and differentiation of African trypanosome species in blood. Experimental Parasitology 111 (1):24–29. Dongyi, H. and Kelemu, S. 2004. Acremonium implicatum, a seed-transmitted endophytic fungus in Brachiaria grasses. Plant Disease 88:1252–1254. Esser, K., Semagn, K. and Wolde-Yohannes, L. 2003. Medicinal use and social status of the soapberry endod (Phytolacca dodecandra) in Ethiopia. Journal of Ethnopharmacology 85:269–277. http://www.geocities.com/semagnk/JEthnoPharmacol2003web.pdf Gardner, M. J., Bishop, R., Shah, T., de Villiers, E., Carlton, J. M., Hall, N., Ren, Q., Paulsen, I. T., Pain, A., Berriman, M., Wilson, R. J. M., Sato, S., Ralph, S. A., Mann, D. J., Xiong, Z., Shallom, S. J., Weidman, J., Jiang, L., Lynn, J., Weaver, B., Shoaibi, A., Wasawo, D., Crabtree, J., Wortman, J. R., Haas, B., Angiuoli, S., Creasy, T., Lu, C., Suh, B., Silva, J., Utterback, T., Feldblyum, T., Pertea, M., Allen, J., Taracha, E., Salzberg, S. L., White, O., Fitzhugh, H. A., Morzaria, S., Craig Venter, J., Fraser, C. M. and Nene, V. 2005. Theileria parva: genome sequence of a bovine pathogen causing a lymphoproliferative disease. Science 309:134–137. Graham, S. P., Honda, Y., Pellé, R., Mwangi, D. M., Glew, E. J., de Villiers, E. P., Shah, T., Bishop, R., van der Bruggen, P., Nene, V., Taracha, E. L. 2007. A novel strategy for the identification of antigens that are recognised by bovine MHC class I restricted cytotoxic T cells in a protozoan infection using reverse vaccinology. Immunome Res. 3:2. Graham, S. P., Pellé, R., Honda, Y., Mwangi, D. M., Tonukari, N. J., Yamage, M., Glew, E. J., de Villiers, E. P., Shah, T., Bishop, R., Abuya, E., Awino, E., Gachanja, J., Luyai, A. E., Mbwika, F., Muthiani, A. M., Ndegwa, D. M., Njahira, M., Nyanjui, J. K., Onono, F. O., Osaso, J., Saya, R. M., Wildmann, C., Fraser, C. M., Maudlin, I., Gardner, M. J., Morzaria, S. P., Loosmore, S., Gilbert, S. C., Audonnet, J., van der Bruggen, P., Nene, V. and Taracha, E. L. N. 2006. Theileria parva candidate vaccine antigens recognized by immune bovine cytotoxic T lymphocytes. Proceedings of the National Academy of Sciences 103:3286–3291. Kelemu, S., Cardona, C. and Segura, G. 2004. Antimicrobial and insecticidal protein isolated from seeds of Clitoria ternatea (L.), a tropical forage legume. Plant Physiology and Biochemistry 42 (11):867–873. Kelemu, S., Changshun, J., Guixiu, H. and Segura, G. 2005. Genetic transformation of the tropical forage legume Stylosanthes guianensis with a rice chitinase gene confers resistance to Rhizoctonia foliar blight disease. African Journal of Biotechnology 4:1025–1033. http://www.academicjournals.org/ajb/PDF/Pdf2005/Oct/Kelemu et al.pdf Kelemu, S., Dongyi, H., Guixiu, H. and Takayama, Y. 2003. Detecting and differentiating Acremonium implicatum: developing a PCR-based method for an endophytic fungus associated with the genus Brachiaria. Molecular Plant Pathology 4 (2):115–118. Kelemu, S., Mahuku, G., Fregene, M., Pachico, P., Johnson, N., Calvert, L., Rao, I., Buruchara, R., Amede, T., Kimani, P., Kirkby, P., Kaaria, S. and Ampofo, K. 2003. Harmonizing the agricultural biotechnology debate for the benefit of African farmers. African Journal of Biotechnology 2 (11):394–416. http://www.academicjournals.org/ajb/abstracts/abstracts2003/Novemberabstracts2003/Kelemu et al.htm Kelemu, S., White, J. F., Muñoz, F. and Takayama, Y. 2001. An endophyte of the tropical forage grass Brachiaria brizantha: isolating, identifying, and characterizing the fungus, and determining its antimycotic properties. Canadian Journal of Microbiology 47:55–62. Lambson, B., Nene, V., Obura, M., Shah, T., Pandit, P., Ole-Moiyoi, O., Delroux, K., Welburn, S., Skilton, R., de Villiers, E., Bishop, R. 2005. Identification of candidate sialome components expressed in ixodid tick salivary glands using secretion signal complementation in mammalian cells. Insect Molecular Biology 14:403–414. Nene, V., Lee, D., Kang’a, S., Skilton, R., Shah, T., de Villiers, E., Mwaura, S., Taylor, D., Quackenbush, J. and Bishop, R. 2004. Genes transcribed in the salivary glands of female Rhipicephalus appendiculatus ticks infected with Theileria parva. Insect Biochemistry and Molecular Biology 34:1117–1128. Nene, V., Lee, D., Quackenbush, J., Skilton, R., Mwaura, S., Gardner, M. J. and Bishop, R. 2002. AvGI, an index of genes transcribed in the salivary glands of the ixodid tick Amblyomma variegatum. International Journal of Parasitology 32:1447–1456. Ndjiondjop, M. N., Semagn, K., Cissoko, M., Tsunematsu, H. and Jones, J. 2006. Genetic relationships among rice varieties using expressed sequence tag and microsatellite markers. Asian Journal of Plant Sciences 5:429–437. http://www.geocities.com/semagnk/AsianJPlaSci2006web.pdf Odongo, D., Kamau, L., Skilton, R., Mwaura, S., Nitsch, C., Musoke, A., Taracha, E., Daubenberger, C. and Bishop, R. 2007. Vaccination of cattle with TickGARD induces cross-reactive antibodies binding to conserved linear peptides of Bm86 homologues in Boophilus decoloratus. Vaccine 25:1287–1296. Pain, A., Renauld, H., Berriman, M., Murphy, L., Yeats, C. A., Weir, W., Kerhornou, A., Aslett, M., Bishop, R., Bouchier, C., Cochet, M., Coulson, R. M. R., Cronin, A., de Villiers, E., Fraser, A., Fosker, N., Gardner, M., Goble, A., Griffiths-Jones, S., Harris, D. E., Katzer, F., Larke, N., Lord, A., Maser, P., McKellar, S., Mooney, P., Morton, F., Nene, V., O’Neil, S., Price, C., Quail, M. A., Rabbinowitsch, E., Rawlings, N. D., Rutter, S., Saunders, D., Seeger, K., Shah, T., Squares, R., Squares, S., Tivey, A., Walker, A. R., Woodward, J., Dobbelaere, D. A. E., Langsley, G., Rajandream, M., McKeever, D., Shiels, B., Tait, A., Barrell, B. and Hall, N. 2005. Genome of the Host-Cell Transforming Parasite Theileria annulata Compared with T. parva. Science 309:131. Pelle, R., McOdimba, F., Chuma, F., Wasawo, D., Pearson, T. W. and Murphy, N. 2002. The African trypanosome cycliphilin A homologue contains unusual conserved central and N-terminal domains and is developmentally regulated. Gene 290:181–191. Semagn, K., Bjørnstad, A. and Ndjiondjop, M. N. 2006. An overview of molecular marker methods for plants. African Journal of Biotechnology 5:2540–2568. http://www.academicjournals.org/AJB/PDF/pdf2006/29Dec/Semagn et al 1.pdf Semagn, K., Bjørnstad, A. and Ndjiondjop, M. N. 2006. Principles, requirements and prospects of genetic mapping in plants. African Journal of Biotechnology 5:2569–2587. http://www.academicjournals.org/AJB/PDF/pdf2006/29Dec/Semagn et al 2.pdf Semagn, K., Bjørnstad, A. and Ndjiondjop, M. N. 2006. Progress and prospects of marker assisted backcrossing as a tool in crop breeding programs. African Journal of Biotechnology 5:2588–2603. http://www.academicjournals.org/AJB/PDF/pdf2006/29Dec/Semagn et al 3.pdf Semagn, K., Bjørnstad, A. and Stedje, B. 2003. Genetic diversity and differentiation in Ethiopian populations of Phytolacca dodecandra as revealed by AFLP and RAPD analyses. Genetic Resources and Crop Evolution 50:649–661. http://www.geocities.com/semagnk/GRACE2003web.pdf Semagn, K., Bjørnstad, A., Skinnes, H, Marøy, A.G., Tarkegne, Y. and William, M. 2006. Distribution of DArT, AFLP and SSR markers in a genetic linkage map of a double haploid hexaploid wheat population. Genome 49:545–555. http://www.geocities.com/semagnk/Genome2006web.pdf Semagn, K., Bjørnstad, A., Stedje, B. and Bekele, E. 2000. Comparison of multivariate methods for the analysis of genetic resources and adaptation in Phytolacca dodecandra using RAPD. Theoretical and Applied Genetics 101:1145–1154. http://www.geocities.com/semagnk/TAG2000web.pdf Semagn, K., Ndjiondjop, M. N. and Cissoko, M. 2006. Microsatellite and agronomic traits for assessing genetic relationships among 18 New Rice for Africa (NERICA) varieties. African Journal of Biotechnology 5:800–810. http://www.geocities.com/semagnk/AfricanJBiotech2006web.pdf Semagn, K., Ndjiondjop, M. N., Cissoko, M., Lorieux, M., Jones, M. and McCouch, S. 2007. Molecular profiling of an interspecific rice population derived from a cross between WAB 56-104 (Oryza sativa) and CG 14 (Oryza glaberrima). African Journal of Biotechnology 6:2014–2022. http://www.academicjournals.org/AJB/PDF/pdf2007/5Sep/Semagn et al.pdf Semagn, K., Skinnes, H., Bjørnstad, A., Marøy, A.G. and Tarkegne, Y. 2007. QTLs controlling FHB resistance and low DON accumulation in a hexaploid wheat population derived from Arina and NK93604. Crop Science 47:294–303. http://www.geocities.com/semagnk/SemagnetaCropScience2007.pdf Semagn, K., Stedje, B. and Bjørnstad, A. 2004. Patterns of phenotypic variation in endod (Phytolacca dodecandra) from Ethiopia. African Journal of Biotechnology 3:32–39. http://www.geocities.com/semagnk/AfricanJBiotech2004web.pdf Semagn, K., Stedje, B. and Bjørnstad, A. 2001. Analysis of genetic diversity and structure in Ethiopian populations of Phytolacca dodecandra using RAPDs. Hereditas 135:51–60. http://www.geocities.com/semagnk/Hereditas2001web.pdf Semagn, K. 2002. Genetic relationships among ten endod types as revealed by a combination of morphological, RAPD, and AFLP markers. Hereditas 137:149–156. http://www.geocities.com/semagnk/Hereditas2002web.pdf Skilton, R. A., Bishop, R. P., Katende, J. M., Mwaura, S. and Morzaria, S. P. 2002. The persistence of Theileria parva infection in cattle immunised using two stocks which differ in their ability to induce a carrier state: analysis using a novel blood spot PCR assay. Parasitology 124:265–276. Shah, T., de Villiers, E., Nene, V., Hass, B., Taracha, E., Gardner, M. J., Sansom, C., Pelle, R. and Bishop, R. 2006. Using the transcriptome to annotate the genome revisited: application of massively parallel signature sequencing (MPSS). Gene 366:104–108. Sunter, J. D., Patel S., Skilton, R., Knowles, D., Scoles, G., Nene, V., deVilliers, E. P. and Bishop, R. 2008. A novel SINE family occurs frequently in both genomic DNA and transcribed sequences in ixodid ticks of the arthropod sub-phylum Chelicerata. Gene 415:13–22. Weeds, P. L., Chakraborty, S., Fernandes, C. D., Charchar, M. J. d’A., Ramesh, C. R., Kexian, Y. and Kelemu, S. 2003. Genetic Diversity in Colletotrichum gloeosporioides from Stylosanthes spp. at centers of origin and utilization. Phytopathology 93:176–185. |
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