- Written on Wednesday, 01 April 2015 07:25
Updates to applicants
1st April 2015:
The call is now closed. All applications are currently undergoing administrative check
17th April 2015
1st internal review based on scientific content currently ongoing
- Written on Wednesday, 01 April 2015 06:20
The Biosciences eastern and central Africa-International Livestock Research Institute (BecA-ILRI) Hub, in collaboration with the Swedish University of Agricultural Sciences (SLU), International Crops Research Institute for the Semi-Arid Tropics (ICRISAT) and Bio-innovate Africa hereby invites applications for a finger millet annotation jamboree to be held from 25 – 29 May, 2015. This workshop will focus on pre-processing, quality check, assembly and annotation of next generation sequence data for the finger millet genome. The jamboree will be conducted at the ILRI Campus, Nairobi, Kenya.
Eligibility / Applicant requirements
The workshop is generally open to PhD students and early career agricultural researchers with a strong interest in improving their bioinformatics and genomics skills. More specific applicant requirements include the following:
- African scientist with PhD or MSc in any agricultural discipline
- Fluent in English (written and spoken)
- Currently conducting agricultural biosciences research with an African national agricultural research program or university in one of the BecA countries: Burundi, Cameroon, Central Africa Republic, Democratic Republic of the Congo, Equatorial Guinea, Eritrea, Ethiopia, Gabon, Kenya, Madagascar, Republic of the Congo, Rwanda, São Tomé and Príncipe, Somalia, South Sudan, Sudan, Tanzania, Uganda.
- Good working knowledge of unix command line is a requirement.
How to apply
Interested eligible scientists / researchers should apply by completing the online application form found here: http://hpc.ilri.cgiar.org/beca/training/Applications/millet/
Participants from previous advanced bioinformatics workshops are strongly encouraged to apply.
Application deadline: 17th April 2015
Information to successful applicants: 24th April 2015
Training dates: 25th – 29th May 2015
There are few funded slots for this workshop. However, applicants who can fund their participation have an added advantage.
For further information, please contact:
Dr. Damaris Odeny,
- Written on Tuesday, 10 February 2015 08:21
The Biosciences eastern and central Africa - International Livestock Research Institute (BecA-ILRI) Hub, located in Nairobi, Kenya, is a shared agricultural research and biosciences platform that exists to increase access for African researchers to affordable, world-class research facilities. The mission of the BecA-ILRI Hub is “Mobilizing Bioscience for Africa’s Development” by providing a Centre of Excellence in agricultural biosciences, which enables research, capacity building and product incubation, conducted by scientists in Africa and for Africa, and empowers African institutions to harness innovations for regional impact. This mission is achieved by the BecA–ILRI Hub’s contributions to:
Research: enabling research to harness the potential of the biosciences to contribute to increasing agricultural productivity and to improving food and nutritional safety and security.
Education: contributing to the education and training of the next generation of African agricultural research leaders and scientists.
Innovation: promoting the development, delivery and adoption of new technologies to address key agricultural productivity constraints.
The BecA-ILRI Hub capacity building program is branded The Africa Biosciences Challenge Fund (ABCF).The ABCF program operates in the critically important intersection between agricultural research and development (ARD), food security, and individual and institutional capacity building. The ABCF program is delivered through i) a visiting scientist program (the ABCF fellowship) targeting scientists and graduate students from African national agricultural research organizations and universities to undertake biosciences research-for-development projects at the BecA-ILRI Hub, and ii) annual training workshops to support the acquisition of practical skills in molecular biology, genomics, bioinformatics, laboratory management, laboratory safety, equipment maintenance, and scientific writing.
The purpose of the ABCF fellowship program is to develop capacity for agricultural biosciences research in Africa, to support research projects that ultimately contribute towards increasing food and nutritional security and / or food safety in Africa, and to facilitate access to the BecA-ILRI Hub facilities by African researchers (and their partners). We seek applicants with innovative ideas for short to medium term research projects (up to 12 months) aligned with national, regional or continental agricultural development priorities that can be undertaken at the BecA-ILRI Hub.
Areas of research
Applicants must be scientists or graduate students affiliated with a NARI or University, and conducting research in the areas of food and nutritional security or food safety in Africa. Those carrying our research in the following areas are particularly encouraged to apply*:
- Improved control of priority livestock and fish diseases including African Swine Fever (ASF); Contagious Bovine Pleuropneumonia (CBPP) and Contagious Caprine Pleuropneumonia (CCPP); Peste des Petits Ruminants (PPR); Rift Valley Fever (RVF); East Coast Fever (ECF); Capripox Virus diseases of ruminants;
- Harnessing genetic diversity for conservation, resistance to disease and improving productivity of crops and livestock and fish (livestock focus: African indigenous breeds, particularly of goats, chickens, and cavies and other small animals);
- Molecular breeding for important food security crops in Africa;
- Plant transformation to address food insecurity in Africa;
- Plant-microbe interactions;
- Tissue culture and virus indexing for production of virus-free planting materials in Africa;
- Orphan / underutilized species of crops and livestock
- Crop pests, pathogens and weed management research, including biological control;
- Microbial technology for improving adaptation of staple food crops and forages to biotic and abiotic stresses;
- Food safety, including addressing aflatoxin and other mycotoxins contamination in food and feeds;
- Nutritional analysis of food and animal feeds;
- Rapid diagnostics for crop, livestock and fish diseases;
- Genomics, bioinformatics and metagenomics including microbial discovery;
- Studies on climate-smart forage grasses and mixed livestock-crop systems;
- Microbial technology for improving adaptation of staple food crops and forages to biotic and abiotic stresses;
- Soil health in agricultural systems;
- Special opportunities also exist to connect with leading international scientists linked with the BecA-ILRI Hub in the following areas: wheat rusts, insect pests, and nitrogen fixation.
- Other special opportunities exist to connect with CGIAR Research Programs (CRPs): Livestock & Fish, Agriculture for Nutrition & Health, Humid tropics etc. Such collaboration would allow the candidate’s research to contribute more directly to an impact-oriented research-for-development agenda, and offer additional opportunities for joint activities.
*This list is not exhaustive.
- Nationals (passport holder) of a BecA-ILRI Hub target country: Burundi, Cameroon, Central Africa Republic, Congo Brazzaville, Democratic Republic of the Congo, Equatorial Guinea, Eritrea, Ethiopia, Gabon, Kenya, Madagascar, Rwanda, São Tomé and Príncipe, Somalia, South Sudan, Sudan, Tanzania and Uganda. In exceptional cases we may consider applicants from other African countries.
- A researcher at a national agricultural research organization or university in a BecA-ILRI Hub target country.
- Currently engaged in research in food and nutritional security or food safety in Africa, or in a research area with relevance to agriculture in Africa.
- MSc or PhD holder in biosciences, agriculture or related subject.
- Good working knowledge of written and spoken English.
- Completed online application form.
- A signed letter of approval of the application from the head of your institute / organization/ university faculty.
We particularly welcome applications from women and less resourced NARS
What the fellowship covers
The BecA-ILRI Hub has secured funding to sponsor several fellowships on a highly competitive basis. BecA-funded fellowships will cover the following costs:
- Research at the BecA-ILRI Hub
- Medical insurance
- Living allowance
Please note that BecA-ILRI Hub-funded fellowships do not cover the cost of fieldwork or research at the applicant’s home institute.
Applicants who can fund their own research (either fully or partially) will have added advantage.
- For any inquiries / clarifications related to this call, please send email to: w.ekaya (at) cgiar.org. Responses to inquiries/clarifications will close on 27th February 2015 mid-night (East African Time).
- Closing date for applications: March 31st 2015.
- Notification to early applicants will start from March 1st 2015. The notification process will be completed by April 30th 2015 (indicative date depending on volume of applications).
- Implementation of projects: projected start time is end May 2015.
To apply for a fellowship, click on the online application link below:
Link to application form: http://hpc.ilri.cgiar.org/beca/training/ABCF_2015/
Decision on applications
Details of successful applicants will be posted on the BecA-ILRI Website on a continuous basis until completion of the review process (indicatively 30th April 2015).
The ABCF Research Fellowship program is supported by the Australian Government through a partnership between Australia's Commonwealth Scientific and Industrial Research Organization (CSIRO) and the BecA-ILRI Hub, by the Syngenta Foundation for Sustainable Agriculture (SFSA), the Bill & Melinda Gates Foundation (BMGF), and the Swedish Ministry of Foreign Affairs through the Swedish International Development Agency (Sida).
For general information on the BecA-ILRI Hub visit http://hub.africabiosciences.org/aboutbecaFor information on the technologies and research-related services available at the BecA-ILRI Hub visit http://hub.africabiosciences.org/activities/services
Regional Aflatoxin control organization recognizes role of Biosciences eastern and central Africa-International Livestock Research Institute (BecA-ILRI) Hub in fighting aflatoxins
- Written on Saturday, 21 March 2015 11:04
From 17-18 February 2015, the sixth Partnership for Aflatoxin Control in Africa (PACA) Steering Committee Meeting made site visits across Africa to engage with regional stakeholders and learn about each country’s efforts to mitigate aflatoxin.
Among the sites visited was the BecA-ILRI Hub in Nairobi Kenya which hosts a number of continental initiatives towards the control of aflatoxin contamination of maize including the Storage and Drying for Aflatoxin Control Project (AflaSTOP). The Steering Committee members appreciated the state-of-the-art laboratory facilities and the result-oriented regional efforts at BecA-ILRI Hub and the progress being made by the AflaSTOP project.
An article published in the PACA newsletter of February 2015 following this visit, highlights the BecA-ILRI Hub's support to many African scientists and their partners in amplifying their efforts to improve nutritional security and food safety in sub-Saharan Africa (SSA). Following stakeholder consultation and analysis, the BecA-ILRI Hub aflatoxin research team, through an Australian government funded partnership with the Commonwealth Scientific and Industrial Research Organisation (CSIRO), established a shared research and capacity building laboratory and team of experts to fill the gap caused by a scarcity of laboratories equipped to adequately tackle the issue of aflatoxins in the region.
Since its establishment in 2011, the platform has hosted work of more than sixty researchers, from seven African countries, Australia, Europe and North America. Collectively, the community around the laboratory has made initial assessments of aflatoxin contamination in a number of African countries, conducted the first inoculated field trials in the region to identify maize varieties less susceptible to aflatoxin accumulation, developed models estimating aflatoxin risk at harvest, and produced a range of other important findings and tools which are beginning to reach end users to help ensure safer food and feed for Africa.
A further dimension of vibrancy and capacity has been infused by the range of other projects currently hosted in the laboratory. These include the AflaSTOP project, led by Sophie Walker, ACDI/VOCA and Agribusiness Systems International; the Aflatoxin Proficiency Testing for Eastern and Central Africa (APTECA) project, led by Tim Herrman, Professor, State Chemist and Director, Texas A&M Agrilife Research, which has achieved ISO 17025 accreditation of aflatoxin testing in the BecA-ILRI Hub lab; the MyDairy project in collaboration with Professor Erastus Kang’ethe, University of Nairobi and various CG Research Programs Agriculture for Nutrition and Health projects led by Dr Delia Grace (ILRI); and a number of others led by researchers from African institutes.
Download the PACA Newsletter here: PACA Newsletter - February 2015
- Written on Friday, 20 March 2015 11:02
The decoding of the tsetse fly’s genome to reveal the genes responsible for its peculiar reproductive and feeding habits opened up new frontiers in dealing with the devastating trypanosome parasite it transmits. The tsetse fly is the sole vector for the parasite which causes sleeping sickness in people and livestock putting an estimated 70 million people in sub-Saharan Africa at risk every year and rendering livestock keeping almost impossible in some parts of the continent.
Unlike other insects, tsetse fly females get pregnant with a single young which is nourished and develops inside the body of the parent with "milk" secreted from special glands. Only eight to ten are produced during the lifecycle of a female tsetse fly, compared to the thousands of eggs laid by a female mosquito over her life span. These insects also rely on proline, an amino acid that is a constituent of most proteins, as their source of energy unlike other insects which utilize different forms of carbohydrates.
From 15-21 March 2015, a team of scientists from across the world are gathered at the Biotechnology Research Institute-Kenya Agricultural and Livestock Research Organisation (BRI-KALRO) to compare the genomes of five tsetse species and determine the genetic factors responsible for their peculiar nutrition and reproduction as well as their vectorial capacity. The workshop to give in-depth meaning to the genome sequences of tsetse flies was convened by the Yale School of Public Health (YSPH) and BRI-KALRO, in collaboration with the Biosciences eastern and central Africa -International Livestock Research Institute Hub(BecA-ILRI) Hub; African Insect Science for Food and health (icipe); the Center for Biotechnology and Bioinformatics –University of Nairobi (CEBIB-UoN); and South African National Bioinformatics Institute (SANBI).
The scientists including Lorna Jemosop from Kenya, Tania Bishola from the Democratic Republic of Congo and Abraham Mayoke from Congo Brazzaville whose participation was facilitated by the BecA-ILRI Hub, are annotating the genes associated with chemosensation and vision, immunity, reproductive physiology, horizontal transfer events, digestion, salivary biology, regulatory systems and more.
The hands-on annotation efforts are being accompanied by topical lectures on the different physiologies given by experts in these fields including BecA-ILRI Hub bioinformatics post-doctoral scientist, Mark Wamalwa.
Australian envoy to Kenya visits Australian funded agricultural research programs at the BecA-ILRI Hub
- Written on Friday, 20 March 2015 07:37
The Head of Mission at the Australian High Commission in Kenya, HE John Feakes visited ILRI on 11 March 2015 to acquaint himself with various agricultural research programs funded by the Australian Government through the partnership between BecA-ILRI Hub and Australia’s national science agency, CSIRO.
During the visit, HE Feakes who was accompanied by Dr Paul Greener, Senior Specialist - Agricultural Productivity and Markets at Australian Department of Foreign Affairs and Trade and key link in the BecA-CSIRO partnership, held discussions with the ILRI director general, Jimmy Smith. Thereafter, he met with BecA-ILRI Hub staff and project partners to get an overview of the partnership; the research projects; and the capacity building activities.
While at the Hub, HE Feakes took a tour of the lab facilities and was able to see the nutrition and mycotoxin analytical laboratory that was established in 2011 through the BecA-CSIRO partnership and which has since hosted work of more than 60 researchers, from seven African countries, Australia, Europe and North America, significantly increasing the capacity for mycotoxin research on the continent.
HE Feakes also met with research fellows conducting their research at the BecA-ILRI Hub under the Africa Biosciences Challenge Fund fellowship program which is co-funded by the Australian and Swedish Governments, the Bill & Melinda Gates Foundation and the Syngenta Foundation for Sustainable Agriculture.
- Written on Friday, 27 February 2015 10:43
The Biosciences eastern and central Africa-International Livestock Research Institute (BecA-ILRI) Hub seeks to strengthen the capacity of the African scientific community to conduct bioscience research that will improve agricultural products and enhance food security in the region. As part of its capacity building programme, the BecA-ILRI Hub will hold a training workshop on introductory molecular biology and bioinformatics from 11th to 22nd May 2015.
This call seeks applicants from eastern and central Africa who require basic skills in molecular biology and bioinformatics to support their research. Graduate students and early career researchers will be selected based on evidence of productive scholarship and research; relevance of the workshop to current research; and engagement in agricultural research within a national research institute or university. Selected participants will attend an intensive 10-day training workshop at the BecA-ILRI Hub in Nairobi, Kenya, with complimentary lectures and hands-on training in genomic DNA purification, polymerase chain reaction (PCR), DNA sequencing and bioinformatics among others. Participants will also experience the research discovery process: potentially novel DNA sequences acquired by each participant will be analyzed and discussed during the bioinformatics sessions.
- A national of one of the BecA countries: Burundi, Cameroon, Central Africa Republic, Congo Brazzaville, Democratic Republic of the Congo, Equatorial Guinea, Eritrea, Ethiopia, Gabon, Kenya, Madagascar, Rwanda, São Tomé and Príncipe, Somalia, South Sudan, Sudan, Tanzania, Uganda;
- Affiliated with a national research program or university in the BecA region;
- Currently engaged in biosciences research BSc, MSc or PhD (or higher) in biological sciences;
- Good working knowledge of written and spoken English
Experts in molecular biology and bioinformatics from the BecA-ILRI Hub and research partners will deliver the training. The training workshop has been organized in partnership with the African Research Consortium for Ecosystem and Population Health (Afrique One). Further details about this training workshop are available at the following links:
- Download concept note here: Introductory molecular biology and bioinformatics concept note
- Online application form: http://hpc.ilri.cgiar.org/beca/training/Applications/IMBB_2015/index.html
About Afrique One
Created in 2009 with the financial support of the Wellcome Trust ranking to 5 millions GBP over 5 years, the consortium Afrique One is made up of 11 core African research centers including universities, and three global partners from the north (University of Bergen-Norway, Swiss TPH-Switzerland, University of Glasgow-United Kingdom) which have been building their collective human and technical capacities through structured and well integrated training and investment programmes.
Advancing the march towards a food secure Africa: The role of the Biosciences eastern and central Africa-International Livestock Research Institute Hub
- Written on Monday, 09 February 2015 12:02
Leading African agricultural scientist, is visiting Australia this week (Brisbane and Canberra) to discuss the latest scientific developments achieved through partnerships with and support from Australian institutions and private sector partners.
‘Africa is at the stage of agricultural development that was experienced by China and India back in the 1980’s and we have their lessons to hasten our development,' says Appolinaire Djikeng, director of the Biosciences eastern and central Africa-International Livestock Research Institute (BecA-ILRI) Hub.
‘Our commitment is to support African scientists national agricultural research systems in responding to the food security needs of the region’ says Dr Djikeng.
The BecA-ILRI Hub, a shared research facility established by the African Union’s New Partnership for Africa’s Development (AU/NEPAD) and ILRI in Nairobi, Kenya, stays on the cutting edge of advanced high-tech biosciences by establishing partnerships with advanced research institutes across the globe, including with Australia’s CSIRO, which facilitates exchange visits of scientists and research technicians to and from Africa.
Djikeng explained that a critically important Australian Government funded partnership between the BecA-ILRI Hub and Australia’s national science agency, CSIRO, has made several discoveries that are being applied by agricultural scientists in Africa, for example, to breed maize varieties that resist the accumulation of aflatoxins that threaten the health of Africa’s maize consumers, improve the production of protein rich cavies (guinea pigs) and to improve programs controlling the spread of African swine fever, an economically devastating disease of pigs on the continent.
‘The private sector is a significant partner in Africa, where even getting enough seed to farmers, let alone appropriate varieties, is challenging. We have private sector partnership to accelerate the delivery to farmers of innovations generated by biosciences research.’
‘In another related public-private partnership with Australia’s International Food Security Research Centre (AIFSRC) of the Australian International Agricultural Research Centre (ACIAR) and the Crawford Fund, we will help plant breeders reduce the cost of producing preferred improved crop varieties for smallholder farmers that meet market demands,’ explains Djikeng.
‘Africa’s food security depends on the continent’s capacity to efficiently use every resource available, including its rich human resource of scientists,’ says Djikeng.
‘With the support of Australia and other partners, the BecA-ILRI Hub is helping Africa lay a strong technological and scientific human resource foundation,’ he said.
Read original post: Crawford Fund News
About the BecA-ILRI Hub
The Biosciences eastern and central Africa-International Livestock Research Institute (BecA-ILRI) Hub is a world-class agricultural research and biosciences facility located within and managed by ILRI in Nairobi, Kenya. It supports African and international scientists conducting research on African agricultural challenges and acts as a focal point for learning, interaction and strategic research — facilitating collaborations that benefit African farmers and markets within the region. The Hub was established as part of an African Union/New Partnership for Africa’s Development (NEPAD) African Biosciences Initiative, which employs modern biotechnology to improve agriculture, livelihoods and food security in eastern and central Africa.
The International Livestock Research Institute (ILRI) works with partners worldwide to enhance the roles that livestock play in food security and poverty alleviation, principally in Africa and Asia. The outcomes of these research partnerships help people in developing countries keep their farm animals alive and productive, increase and sustain their livestock and farm productivity, find profitable markets for their animal products, and reduce the risk of livestock-related diseases.
ILRI is a not-for-profit institution with a staff of more than 600 and, in 2014, an operating budget of about USD83 million. A member of the CGIAR Consortium working for a food-secure future, ILRI has its headquarters in Nairobi, Kenya, a principal campus in Addis Ababa, Ethiopia, and offices in other countries in East, West and Southern Africa and in South, Southeast and East Asia.
ILRI leads the CGIAR Research Program on Livestock and Fish, leads a component of a CGIAR Research Program on Agriculture for Nutrition and Health on the prevention and control of agriculture-associated diseases, and contributes to six other CGIAR research programs. Staff members work in integrated sciences and biosciences programs that develop and deliver science-based practices, provide scientific evidence for decision-making and develop capacities of livestock-sector stakeholders.
- Written on Friday, 30 January 2015 07:08
Efforts of the International Glossina Genome Initiative (IGGI) resulted in the annotation and publication of the Glossina morsitans morsitans genome in April, 2014. The genome sequence of Glossina is of interest not only as an important vector but also for evolutionary comparison due to its positioning in the higher Diptera. Recent work supported by the National Institutes of Health USA has generated five additional Glossina genomes (G. pallidipes, G. brevipalpis, G. austeni, G. fuscipes fuscipes and G. gambiensis palpalis) and the genomes for two related dipterans, a non-vector blood feeder (stable fly, Stomoxys calcitrans) and a non-blood feeding dipteran relative (house fly, Musca domestica). These resources will facilitate comparative analysis with the G. m. morsitans genome and other available genomes to understand the various phenotypes that mediate differential vector competence, haematophagy, viviparity, host-seeking and discriminatory biology. These efforts may highlight novel targets and approaches for control of tsetse fly populations.
The Yale School of Public Health (YSPH) and Biotechnology Research Institute-Kenya Agricultural and Livestock Research Organisation (BRI-KALRO), in collaboration with the International Center of Insect Physiology and Ecology (ICIPE), the Biosciences eastern and central Africa -International Livestock Research Institute Hub (The BecA-ILRI Hub), the Center for Biotechnology and Bioinformatics –University of Nairobi (CEBIB-UoN) and South African National Bioinformatics Institutes (SANBI), invite applications for participation in an up-coming workshop on comparative analysis of the five major tsetse species. The workshop will take place at BRI, Muguga, Kenya on March 15th – 21st , 2015.
Scope and Topics
The workshop will investigate the differences and similarities among the genomes of the five tsetse species relative to those of the stable and house flies to underpin genetic factors in tsetse flies that are responsible for differences in their bionomics and vectorial capacity. The workshop topics will include annotations of genes associated with chemosensation and vision, immunity, reproductive physiology, horizontal transfer events, digestion, salivary biology, regulatory systems and more! The hands-on annotation efforts will be accompanied by topical lectures on the different physiologies given by experts in these fields.
Evidence of prior training and/or experience in computational biology/bioinformatics.
Prior knowledge of genome annotations and participation in the IGGI network will be an advantage.
Access to personal/laptop computer.
Postgraduate students, postdoctoral fellows and junior faculty involved in bioinformatics and/or functional genomics of insects. Prior knowledge on tsetse and trypanosomiasis will be an advantage.
Registration for Participation
Registration and lunch will be covered by the sponsors. Participants are expected to meet their own accommodation, local and international travel expenses to and from BRI, Muguga, Kenya. Full board is available at $55 per day. The organizers have limited competitive travel and accommodation fellowships for exemplary applicants unable to cater for their expenses. Please indicate your support needs to the organizers when you apply.
Interested applicants are required to submit the following documents, merged into one document:
Application cover letter (please describe your background, personal area of interest and potential synergy between the training and your career– limit to 1 page)
Two recommendation letters from persons familiar with the applicant’s potential.
Follow the link: http://hpc.ilri.cgiar.org/beca/training/Applications/Glossina/ to apply.
For any clarifications, contact Drs. Geoffrey Attardo (geoffrey.attardo (at) yale.edu) or Paul Mireji (peterpaul.mireji (at) yale.edu)
CLOSING DATE: February 7th, 2015
- Written on Monday, 08 December 2014 16:08
The BecA-ILRI Hub celebrated Dr Joshua O Amimo, a BecA-ILRI Hub alumnus who received his Ph.D. in Animal Genetics and Breeding from the University of Nairobi, Kenya on 5th December 2014.
Amimo who was among 105 PhD graduates conferred degrees by the university’s Chancellor Dr. Vijoo Rattansi, has been carrying out research on swine enteric viruses affecting pigs in smallholder farms along Kenya-Uganda border and successfully defended his thesis titled “Molecular detection, genetic characterization and zoonotic potential of porcine rotaviruses”.
Amimo’s 18-month scholarship under the ABCF fellowship program gave him access to mentorship and availed molecular biology tools that facilitated the advance in detection of rotaviruses in non-clinical pigs which would help in the design of control strategies of diarrhea in pigs in smallholder farms. He also managed to detect two other swine viruses (Astroviruses and Kobuviruses) for the first time in African pig population during his placement at the BecA-ILRI Hub. The presence of these gastroenteritis-producing viruses in clinically healthy pigs represents a source of infection of pigs, and possibly to humans.
During his placement, Amimo played a mentorship role to other ABCF fellows. Of his experience at the BecA-ILRI Hub Amimo says "Success is not counted by how high you have climbed but by how many you brought with you."
Amimo's PhD was sponsored by the Global One health program of the Ohio State University. His work feeds into a bigger Australian funded project on "Understanding African Swine Fever epidemiology as a basis for control", which will help in the development of accurate diagnostic tools and implementation of appropriate control strategies for pig diarrhea to improve pig health and production. Improved pig health will lead to improved production and ultimately improved livelihood.
Call for applications: PhD Fellowshis in Health and Productivity of Livestock at the Nelson Mandela African Institution of Science and Technology (NM-AIST), Arusha, Tanzania.
- Written on Monday, 19 January 2015 09:07
The Nelson Mandela African Institution of Science and Technology (NM-AIST) in Arusha, Tanzania in collaboration with four partner universities; Penn State University (PSU), Washington State University (WSU), University of Glasgow(UoG) and Scotland Rural College (SRUC) will be implementing a PhD program entitled “Program for Enhancing the Health and Productivity of Livestock”. Supported by the Bill & Melinda Gates Foundation, the program is a joint effort of the five universities andit is intended to train and engage researchers on projects to improve the health of livestock and communities in Sub-Saharan Africa.
Under the program a multidisciplinary and international cohort of PhD students will be trained on development of effective strategies for improving the health and productivity of smallholder farmers’ livestock, and in turn enhance the wellbeing of households and communities. In this research-intensive training program, fellows will work to enhance the economic and food security of smallholder farmers in East Africa by improving livestock genetics, health, and productivity while safeguarding animal welfare, public health and the environment.
Potential projects include, among others, assessment of uptake and impact of interventions such as vaccination on the economic and food security of smallholder farmers; policy and social determinants of improved livestock health, productivity, and market access; and determination of antibiotic efficacy and impact on livestock health and antimicrobial resistance. Preferably, potential projects should be developed to address the following broad areasof enhancing health and productivity of smallholder livestock production that are also in line with the Bill and Melinda Gates Foundation’s focus on increasing productivity of smallholder livestock systemsin Sub-Saharan Africa:
- Socio-economic impact and strategies for effective control of Contagious Caprine Pleuropneumonia, Peste des Petits Ruminants and Sheep and Goatpox to improve small ruminant productivity in smallholder farming systems in East Africa.
- Optimizing animal health interventions through improved disease diagnostic tools for transboundary diseases of small ruminants in East Africa.
- Understanding the socio-economic impact and the inter-epidemic epidemiology of Rift Valley fever in East Africa.
- Spatial and temporal patterns of Foot and Mouth Disease (FMD) virus circulation in livestock populations and FMD control settings in wildlife-livestock interface areas of East Africa.
- Etiology and productivity impacts of ruminant abortions in northern Tanzania.
- Immunizing to enhance broad spectrum innate immunity in small ruminants.
- Defining the barriers to uptake of the East Coast fever (ECF) infection and treatment method of immunization and, quality of tetracycline and impact on “virulence” of the ECF infection and treatment immunization.
- Tsetse and trypanosome prevalence and distribution in the Maasai Steppe.
- Increasing nutritional and economic impact of smallholder local chicken through introduction of highly productive Kuroiler breed and deployment of mobile application system for better health and record management.
- Genetic mechanisms of resistance to Newcastle disease in locally adapted breeds of poultry and determination of Newcastle disease impact through intervention trial analysis.
- Antibiotic efficacy and impact on smallholder broiler production in peri-urban and rural areas of Northern Tanzania.
- Barriers to health of smallholder poultry flocks and development of interventions with minimal impact on antibiotic resistance.
- Robust, low-cost, point-of-care diagnostics for multiplex detection of livestock and public health significance in Tanzania.
- Investigation of farmer-led breeding goals and strategies in smallholder dairy systems to cope with variations in feed sources and quality
- Use of cow-side milk progesterone tests in the management of dairy cow fertility
- Use of mobile technology for phenotype recording for dairy cow management and genetic improvement in smallholder production systems.
In addition to the proposed research areas above, highly innovative proposals that have potential to bring big impact on transformation of the lives and socio-economic wellbeing of smallholder livestock farmers in East Africa will be considered.
The Nelson Mandela African Institution of Science and Technology is soliciting applications from qualified candidates for five (5) PhD fellowships to take part in the program for the 2015/16 academic year, comprising three (3) from Tanzania and two (2) from either Kenya, Uganda or Ethiopia. Selected candidates will be registered at NM-AISTand pursue their studies by thesis and, upon successful completion of studies they will be awarded a PhD of NM-AIST (See admission criteria for PhD by thesis at www.nm-aist.ac.tz). Applicants will be subjected to an interview by a panel comprising members from the partner institutions and selection will be based on passing the interview and successful defense of the research proposal. The fellowship cover tuition fees, stipend, research and other study related costs based on NM-AIST fee structure.
The application package should comprise the following:
• Certified photocopies of relevant certificates and academic transcripts.
• Most recent Curriculum Vitae.
• Names and contact details of at least two professional referees.
• Abridged research proposal of not more than three pages.
• Contact details:Telephone, E-mail and Postal Addresses.
Applications containing all the above documents and titled “Application for PhD Fellowship under PEHPL” should be sent by e-mail or post to:
Program for Enhancing Health and Productivity of Livestock (PEHPL),
The Nelson Mandela African Institution of Science and Technology,
P.O. Box 447,
ARUSHA – TANZANIA E-mail: dvc-acad(at)nm-aist.ac.tz; Copy to: admission(at)nm-aist.ac.tz
Female candidates are very highly encouraged to apply.
Deadline for receipt of applications: 15th February 2015.
- Written on Wednesday, 07 January 2015 09:11
In collaboration with The African Union, New Partnership for Africa’s Development (NEPAD) Agency and the African Orphan Crops Consortium (http://www.mars.com/global/african‐orphan‐crops.aspx), the University of California, Davis is launching the African Plant Breeding Academy. The Plant Breeding Academy is a premium professional certificate program currently offered in the USA, Europe and Asia. Eight classes offered worldwide since 2006 were attended by 133 breeders from 43 countries, making the UC Davis Plant Breeding Academy (PBA) the most recognized program of its kind. The program covers the fundamentals and the most recent developments in plant breeding theory and practice. In 2013, UC Davis has been recognized as the top University for teaching and research in
agriculture in the world (ucdavis.edu).
The goal of the African Plant Breeding Academy is to train practicing African plant breeders in the most advanced theory and technologies for plant breeding in support of critical decisions for improvement. This includes the latest concepts in plant breeding, quantitative genetics, statistics and experimental design. It also includes accurate and precise trait evaluations, development of appropriate strategies to integrate genomics into breeding programs and experience in identifying and utilizing genomic data and DNA‐based markers in breeding programs.
This six‐week program will be delivered in three 2‐ week classes with session one beginning in Nairobi, Kenya on June, 2015. The instructors are internationally recognized experts in plant breeding and seed technology. Scholarships are available for select students to attend this prestigious program.
Participant criteria and selection
Classes are limited to 25‐30 students. All students will be from Africa. Ideal students will:
1) Have a Ph.D. or Masters degree with significant plant breeding experience
2) Have taken courses in statistics, genetics and breeding
3) Be currently managing a breeding program in any crop
4) Have proficiency in English language
5) Be available to attend all 3 sessions
Closing date for application is January 30, 2015.
- Written on Thursday, 20 November 2014 06:59
The BecA-ILRI Hub Advisory Panel chair Eugene Terry has been recognized by the Modernizing African Food System Consortium (MAFS) for his devotion to raising the productivity of smallholder African farmers through advances in the biological sciences.
Terry has been lauded as being among the few African scientists who have “demonstrated the breadth of vision, the scientific discipline, the managerial skills and sheer audacity in channeling the power of scientific research to make improved technologies available to the majority of African people, who currently work in agriculture.”
Throughout his career, Terry has been involved in technology development and transfers from large international agribusinesses for the benefit of small farmers in Africa. He views agriculture as a business with great potential in and would like to see agricultural education institutions in Africa develop new curricula and approaches to training that will better equip students with business, research and marketing skills.
The MAFS is a consortium of universities in Africa and USA that aim to help African agricultural education and training (AET) institutions develop the technical skills and institutional capacity required to modernize African food systems.
Read the full article: http://www.mafs-africa.org/african_role_models/featured_role_model
Read about the BecA-ILRI Hub Advisory Panel: http://hub.africabiosciences.org/becahub-advisory-panel
- Written on Friday, 14 November 2014 12:57
“The planet needs more plant scientists”
African educators meet in Nairobi to develop educational tools for a next generation of African plant breeders
Educators of plant breeders in Africa are meeting in Nairobi this week to develop new education and training materials for “Demand led plant variety design”. The educators from several African universities, regional and international organizations are sharing experiences across eastern, southern and West Africa on the content and organization of current plant breeding courses and future needs. They are benefiting from the participation of plant breeders from the private sector who work in a market driven environment.
The new educational materials will be based on demand-led R&D. They will be available for inclusion in post graduate programs in African universities. The course materials will also be available for continuing professional development of practicing plant breeders; and they will be made available on line for open and distance learning, thus extending the reach of the new knowledge Africa-wide.
Dr Appolinaire Djikeng, Director of Biosciences eastern and central Africa – International Livestock Research Institute (BecA-ILRI) Hub, Nairobi, said: “The planet needs more plant scientists. Over the past decade, there has been rapid growth in the numbers of biomedical scientists but no growth at all in the total number of plant scientists. Yet the demand for increasing quantities and higher quality, safe and nutritious food will double over the next 50 years. The BecA-ILRI Hub is giving a strong focus to strengthening plant breeding in Africa. As a shared research platform, the BecA-ILRI Hub makes available the tools for modern plant breeding to plant breeders, especially those working on staple food crops “
Dr Pangirayi Tongoona and Dr Agyemang Danquah, the delegates of the West African Centre for Crop Improvement (WACCI) at the University of Ghana said: “WACCI is very pleased to be associated with the development of these new education and training modules on demand -led plant variety development. We believe plant breeding should be driven by stakeholder demand and this will enhance adoption of new varieties. The inclusion of demand-led approaches to variety design will help educate young African plant breeders on the importance of understanding changing customer demands when setting targets and traits to include in their national crop breeding programs. ”
Dr Heather Merk Program Lead for the Syngenta Plant Breeding Academy described the continuing education program that she leads within the Syngenta company. Dr Merk said “Continuing education and professional development of plant breeders is critically important. In the US, the National Association of Plant Breeders (NAPB) is a respected professional organization that brings together plant breeders from the public and private sectors in the US, where (pre) plant breeding in the universities is very important. I see a similar situation in countries in Africa, where having continuing professional development available to plant breeders in both the public and private sectors will contribute to the development of market driven, well adapted and widely adopted new plant varieties of the major food crops in Africa”.
Demand led Plant Variety Design
The project on “Demand led plant variety design” is the first project being supported by a new Alliance on R&D for food security, formed by the Syngenta Foundation for Sustainable Agriculture (SFSA), the Australian International Food Security Research Centre of the Australian International Agricultural Research Centre (AIFSRC/ACIAR) and the Crawford Fund).
Partners in the Alliance for Agricultural R&D for Food Security
The AIFSRC is an entity established by the Australian Government in the Australian Centre for International Agricultural Research (ACIAR) to accelerate the delivery of research innovations for food security. The AIFSRC aims to support research to accelerate the uptake of new technologies; and understanding and resolving constraints to dissemination and adoption of new technologies. It has a focus on exploring different partnership models to achieve effective implementation, delivery and communication of the adoption of agricultural research for development.
The Crawford Fund is a Canberra based entity whose purpose is to make more widely known the benefits that accrue both to Australia and the developing world from investment in international agricultural research and development. The CF conducts public awareness activities, commissions studies on research policy and practices related to its mission and arranges specialist training activities in Australia and abroad for developing country scientists.
The Syngenta Foundation for Sustainable Agriculture is a non-profit organisation based in Basel, Switzerland. Its mission is to create value for small farmers in developing countries by supporting innovation in sustainable agriculture and activation of value chains. It works with a wide range of partners operationally and in thought leadership. SFSA engages, for example, the public sector, international organizations, think tanks, the private sector, other foundations, social entrepreneurs, and non-governmental organizations (NGOs). As well as establishing pilot projects, the Foundation also puts major emphasis on successful scale-up.
The Global Change Institute at The University of Queensland, Australia, is an independent source of research, ideas and advice for addressing the challenges of global change. GCI advances discovery, creates solutions and advocates responses that meet the challenges presented by climate change, technological innovation and population change. Measured through a combination of three key global university rankings, UQ is currently ranked in the top 100 of all universities worldwide and is a founding member of the Australian Group of Eight (Go8) universities. The University of Queensland Global Change Institute is the program manager of the Demand led plant variety design project, on behalf of the partners.
Biosciences eastern and central Africa (BecA-ILRI Hub)
Appolinaire Djikeng, BecA-ILRI Hub Director a.djikeng at cgiar.org
West Africa Crop improvement Centre (WACCI), University of Ghana
Crawford Fund, Canberra Australia
Syngenta Foundation for Sustainable Agriculture
- Written on Tuesday, 11 November 2014 12:10
The BecA-ILRI Hub is pleased to congratulate Dr Gladness Elibariki, a BecA-ILRI Hub alumnus who received her Ph.D. in Biotechnology from the University of Dar es Salaam, Tanzania on 8 November 2014.
Elibariki who was among 68 PhD graduates conferred degrees by the university’s Acting Chancellor Ambassador Nicholas Kuhan, has been carrying out research on two major cassava viruses and successfully defended her thesis titled “Regeneration, diversity and RNA interference strategies to enhance resistance to cassava mosaic viruses in Manihot esculenta”.
In 2012, Elibariki successfully applied for a fellowship under the Africa Biosciences Challenge Fund (ABCF) program which enabled her to spend five months at the BecA-ILRI Hub. Her placement at the Hub gave her access to cutting-edge molecular biology tools that facilitated the advance in developing cassava landraces that are resistant disease resistance.
According to the Food and Agriculture Organization of the United Nations, cassava is the fourth most important source of carbohydrate in Africa. This food crop ranks second to maize in Tanzania and is grown by subsistence farmers for local consumption and as a cash crop on local markets. Unfortunately, the majority of cassava landraces grown in Tanzania are highly susceptible to viral diseases, compromising the food security in the country.
Elibariki’s work is feeding into a bigger research program at the Mikocheni Agricultural Research Institute (MARI) which is supported by the BecA-ILRI Hub and aims at producing several cassava cultivars that are resistant to the Cassava mosaic disease.
- Written on Tuesday, 16 September 2014 20:41
Through an innovation platform system (IP), the BecA-led project on "Harnessing genetic diversity for improved goat productivity" has begun addressing the issue of low productivity of flocks by training farmers on best practices in goat keeping.
This initiative will enable the goat farmers in Ndu, a local market in north western Cameroon, to maximize on the increased demand for their animals in major cities in the country and in neighbouring Gabon.
- Written on Tuesday, 16 September 2014 08:48
Scholarships for Masters Studies and Fellowships in Australia in the priority sectors of mining, agriculture/fisheries, or public policy/governance are now being offered to eligible African candidates under the following awards:
- Australia Awards Africa Fellowships (for study in 2015): professional development short courses in specialized fields delivered in both Africa and Australia (applications close 16 January 2015)
- Australia Awards Scholarships (for study in 2016): Masters-level study at an Australian University (applications close 12 December 2014)
The application process for Australia Awards is open and competitive, providing equal opportunity regardless of gender, ethnicity or disability. The Australian Government also strongly encourages applications from women. Mechanisms are in place to support the participation of people with disability.
The Awards aim at attracting high calibre, early to mid-career professionals from the public and private sectors as well as civil society who have the potential to lead and support accelerated progress towards development objectives in their country.
Further details about the Awards and how to submit an application can be found at the following website: www.australiaawardsafrica.org.
- Written on Thursday, 11 September 2014 12:37
10th-14th November 2014, ILRI Campus, Nairobi, Kenya
Call for applications
The BecA-ILRI Hub hereby invites applications for a workshop on scientific research paper writing to be held from 10th to 14th November 2014. The workshop is one of BecA-ILRI Hub’s annual training workshops under the capacity building portfolio, whose objective is to strengthen the capacity of African NARS to effectively, efficiently and sustainably deliver on their national mandates. The training will be conducted at the ILRI Campus, Nairobi, Kenya.
Eligibility / Applicant requirements
The workshop is generally open to PhD students and early career agricultural researchers with a strong interest in improving their writing skills. More specific applicant requirements include the following:
• African scientist with PhD or MSc in any agricultural discipline
• Fluent in English (written and spoken)
• Currently conducting agricultural biosciences research with an African national agricultural research program or university in one of the BecA countries: Burundi, Cameroon, Central Africa Republic, Democratic Republic of the Congo, Equatorial Guinea, Eritrea, Ethiopia, Gabon, Kenya, Madagascar, Republic of the Congo, Rwanda, São Tomé and Príncipe, Somalia, South Sudan, Sudan, Tanzania, Uganda.
• A project report for conversion to a paper, and/or the figures and tables and any other illustrative material that have been generated from data analysis
• Women candidates are particularly encouraged to apply
How to apply
Interested eligible scientists / researchers should apply by completing the online application form; http://hpc.ilri.cgiar.org/beca/training/Writeshop2014/index.html
In addition, the applicant must attach a supporting letter from his/her supervisor or Head of Institution.
Key dates / Application deadline
• Call for applications release: 11th September 2014
• Application deadline: 5th October 2014
• Information to successful applicants: 10th October 2014
• Information to unsuccessful applicants: 11th October 2014
• Training dates: 10th – 14th November 2014
Applications submitted after the 5th October 2014 deadline and incomplete applications will not be considered.
There are several fully funded places for this workshop. However, applicants who can fund their participation have an added advantage. The cost of the workshop is $1500, excluding flights and accommodation
Inquiries about the workshop and / or the BecA-ILRI Hub Capacity Building Program should be directed to Dr. Wellington Ekaya, Senior Scientist Capacity Building (w.ekaya "at" cgiar.org) or Ms. Valerian Aloo, Capacity Building Program Officer (v.aloo "at" cgiar.org).
For comprehensive information about the BecA-ILRI Hub visit http://hub.africabiosciences.org/
Below is the concept note and information flyer for the workshop.
- Written on Tuesday, 02 September 2014 09:11
A team of scientists from the John Innes Centre (JIC), UK, visited the BecA-ILRI Hub from 20-22 August 2014. The team included lead crop researchers and PhD students who are collaborating with the BecA-ILRI Hub to develop capacity building-through research-modules to support African national agricultural research system (NARS) scientists in applying Next Generation Sequencing techniques to their breeding programs.
This partnership for the capacity development of African crop breeders is among several capacity building, resource mobilization and technology transfer activities made possible by a memorandum of understanding (MoU) between JIC, ILRI and the BecA-ILRI Hub in January this year.
As an early activity in the BecA-ILRI Hub/JIC alliance, a group of African, BecA and JIC researchers are planning to work together to identify useful molecular markers to accelerate rice breeding for disease resistance and other traits. This undertaking was identified in response to breeding program needs by Negussie Zenna, a rice breeder from the AfricaRice Cente and long-time user of the BecA-ILRI Hub laboratory facilities and service platforms. The project will be implemented at the BecA-ILRI Hub by Jagger Harvey (Scientist, BecA-ILRI Hub); Cristobal Uauy (group leader, JIC); and Tilly Eldridge (PhD student, Coen research group, JIC).
About the John Innes Centre
The John Innes Centre is an independent, international centre of excellence in plant science and microbiology based in the UK whose mission is:
To generate knowledge of plants and microbes through innovative research
- To apply our knowledge of nature’s diversity to benefit agriculture, the environment, human health and well-being
- To train scientists for the future
- To engage with policy makers and the public
Building bioinformatics capacity in Africa: The BecA-ILRI Hub and Swedish University of Agricultural Sciences partnership
- Written on Tuesday, 02 September 2014 06:22
Regional and international experts strengthen the capacity of the African scientific community in bioinformatics and computational biology
Technological advances in bio scientific agricultural research have meant that scientists are generating vast quantities of data concerning the structure and functions of different genes in living organisms over a shorter period of time. To translate the huge amounts of data produced into practical information such as livestock breeds, crop varieties, differences between breeds, responses to environmental stress etc., there is need for scientists to have the tools to decipher this information.
Since 2007, Erik Bongcam-Rudloff, a biologist and computer scientist who heads the Swedish University of Agricultural Sciences (SLU)-Global Bioinformatics Centre has been coming to Kenya to facilitate a workshop aimed at equipping researchers from across Africa with skills in bioinformatics, the application of computer technology to the management of biological information.
“This workshop does not just teach skills,” says Bongcam, “it also arms participants with a whole virtual system that gives them access to a complete workbench with a variety of bioinformatics tools which they can upload on any computer and continue working with from their home institutions.”
Bongcam’s participation in BecA-ILRI Hub’s annual workshop on advanced bioinformatics is part of a bigger partnership which provides support to BecA-ILRI Hub’s bioinformatics platform, affording BecA access to technical advice and enhanced expertise from SLU, including infrastructure upgrade.
This year’s workshop which took place from 18 – 29 August 2014 at the International Livestock Research Institute (ILRI) Nairobi campus brought together participants from national agricultural research systems (NARS) in 13 African countries including Benin, Cameroon, Central African Republic, Congo Brazaville, Democratic Republic of Congo, Eritrea, Ethiopia, Kenya, Madagascar, Somalia, Sudan, Tanzania and Uganda.
The program exposed participants to comprehensive lectures and hands-on training sessions in Linux, Perl programming, genomics and next generation sequencing technologies, genome assembly, metagenome and metagenomic analysis tools and their applications to biological research. Other facilitators at the workshop included Isak Sylvin from SLU; Manpreet Katari from New York University; Sarah Schaack from Reed University; Gordon Harkins from South African National Biodiversity Institute (SANBI); Leendert Cloete from SANBI; Mark Wamalwa, Joyce Nzioki and Dedan Githae from the BecA-ILRI Hub; and Alan Orth and Maureiq Edith from ILRI.
The workshop is funded by the Australia Government Department for Foreign Affairs and Trade (DFAT) through a partnership between Australia's Commonwealth Scientific and Industrial Research Organization (CSIRO) and the BecA-ILRI Hub; the United Nations Educational, Scientific and Cultural Organization (UNESCO); the Syngenta Foundation for Sustainable Agriculture (SFSA); the Bill & Melinda Gates Foundation (BMGF); and the Swedish Government.
Read related story (Swedish) - SLU's cooperation with Africa highlighted
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