Making agricultural sense of data in Sudan: The BecA-ILRI Hub bioinformatics workshop in Khartoum

From 1 December to 6 December 2014, the BecA-ILRI Hub held a bioinformatics workshop in Khartoum, Sudan. Mark Wamalwa, a post-doctoral scientist in bioinformatics and Joyce Nzioki, a bioinformatics analyst from the BecA-ILRI Hub, in collaboration with Andreas Gisel from the International Institute of Tropical Agriculture (IITA), Nigeria and Etienne De Villiers from the Kenyan Medical Research Institute (KEMRI) Wellcome Trust, Kilifi-Kenya.

BecA bioinformatics workshop in Sudan 2014

(Left-right) Nada Hamza Babiker, director, Commission of Biotechnology and Genetic Engineering, speaks during opening session; Joyce Nzioki, bioinformatics analyst, the BecA-ILRI Hub, gives support to workshop participants; Etienne De Villiers, scientist, Kenya Medical Research Institute (KEMRI) Wellcome Trust, Kilifi-Kenya prepares to facilitate a session

(Left-right) Ali Babiker, Assistant Professor, Plant Genetics Resources Unit-Agricultural Research Corporation pays attention during a lecture; H.E Alsadig Sabah Alkhair, State Minister of Science and Communications; Prof Migdam Elshekh Abdelgani, Director General, National Center for Research-Sudan; Joyce Nzioki, the BecA-ILRI Hub during the opening session; Mark Wamalwa, post-doctoral scientist in bioinformatics, the BecA-ILRI Hub, facilitates a session on bioinformatics

(Left-right) Ali Babiker, Assistant Professor, Plant Genetics Resources Unit-Agricultural Research Corporation pays attention during a lecture; H.E Alsadig Sabah Alkhair, State Minister of Science and Communications; Prof Migdam Elshekh Abdelgani, Director General, National Center for Research-Sudan; Joyce Nzioki, the BecA-ILRI Hub during the opening session; Mark Wamalwa, post-doctoral scientist in bioinformatics, the BecA-ILRI Hub, facilitates a session on bioinformatics

The workshop which attracted participants from 13 institutions in Sudan received support the Sudan Government and the National Centre for Research (NCR). Participants were introduced to the basic concepts of bioinformatics and the use of various tools for the analysis of complex genomic data; Next Generation Sequencing (NGS) technologies and the tools for NGS data analysis, data integration and visualization; multiple sequence analysis and phylogenetics; and sequence analysis using the eBiokit.

Participants to the workshop received the eBioKit, a complete kit of bioinformatics tools, enabling them to work independently from any location. The system runs multiple open source web services on an Apple Mac-mini where all databases are stored locally. The e-biokit reduces the need for fast internet connection while giving the users an opportunity to incorporate their data sets in widely used web services.

Sudan is among the eastern and central African countries where the BecA-ILRI Hub is expanding the base of expertise in agricultural research. Since 2011, over 10 national scientists from Sudan have had access to training in the latest agricultural bioscience technologies as they conducted research on the country’s priority areas addressing food and nutritional insecurity and livestock health.